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中文题名:

 野生大豆GsCNGC20-d和GsCDPK29基因参与耐盐性调控的生理功能研究    

姓名:

 皮博艺    

学号:

 2019216007    

保密级别:

 公开    

论文语种:

 chi    

学科代码:

 071001    

学科名称:

 理学 - 生物学 - 植物学    

学生类型:

 博士    

学位:

 理学博士    

学校:

 南京农业大学    

院系:

 生命科学学院    

专业:

 植物学    

研究方向:

 植物逆境生物学    

第一导师姓名:

 於丙军    

第一导师单位:

  南京农业大学    

完成日期:

 2023-05-30    

答辩日期:

 2023-05-16    

外文题名:

 Physiological Functions of Wild Soybean GsCNGC20-d and GsCDPK29 Genes Involved in Regulation of Salt Tolerance    

中文关键词:

 大豆 ; 转录组学 ; 耐盐性 ; GsCNGC20-d ; GsCDPK29 ; 共表达    

外文关键词:

 soybean ; transcriptomics ; salt tolerance ; GsCNGC20-d ; GsCDPK29 ; co-overexpression    

中文摘要:

植盐胁迫使严重危害作物生产的非生物胁迫因素之一,其引起的离子毒害对植物的多种生命活动都会产生不利影响。植物则通过对离子的选择性吸收、渗透调节物质的积累、活性氧的清除以及激素应答等多种机制维持正常生命活动。植物对盐胁迫耐受性的增强不仅表现在Na+含量的降低,维持最适胞质Na+/K+比值是植物耐盐的关键决定因素,因此寻找植物Na+、K+稳态的典型离子通道和转运体以及特定的信号通路,对解析盐胁迫应答机制至关重要。植物遭受盐害时,会激活一系列的信号通路抵抗盐胁迫,首先通过细胞表面的传感器感知环境盐胁迫信号,随后将信号传递给第二信使(如Ca2+),通过第二信使将信号传递到细胞内,进而引起一系列的应答机制。大豆是人类生产生活中植物蛋白和油脂的重要来源,栽培大豆(Glycine max)是由野生大豆(Glycine soja)驯化而来,与栽培大豆相比,野生大豆具有更丰富的遗传多样性、并具有耐盐、耐旱、耐荫和抗病虫等多种抗性较强的野外生存能力,因此在大豆耐盐机理和品种改良方面具有重要的研究价值。

本研究再野生大豆BB52材料和栽培大豆N23674材料存在耐盐性差异的基础上,通过比较转录组学和生物信息学分析筛选和鉴定了与耐盐性相关的关键功能基因,利用qRT-PCR、亚细胞定位、酵母双杂(Yeast two-hybrid,Y2H)、荧光素酶(Luciferase, LUC)互补实验、双分子荧光互补(Bimo-lecular fluorescence complementation, BiFC)、CRISPR-Cas9基因编辑、拟南芥杂交、拟南芥浸花法转化和大豆发根转化等多种分子生物学技术和遗传学手段,研究了野生大豆耐盐关键基因参与盐胁迫调控的生理功能机制。主要研究结果如下:

盐胁迫下野生大豆BB52材料与栽培大豆N23674材料相比具有更强的盐胁迫适应能力;野生大豆BB52可将过量的Na+主要积累在根部,减少向地上部的运输,降低地上部Na+含量和Na+/K+值,从而缓解NaCl对大豆植株地上部的伤害。从盐胁迫下BB52和N23674幼苗根的转录组测序结果中重点分析了仅在耐盐的野生大豆BB52根中上调的8651个差异表达基因。通过GO注释、KEGG富集等手段筛选到植物病原互作途径中与Ca2+信号相关的调控途径,在该途径上游显著富集了6个编码Ca2+转运相关的通道蛋白——环核苷酸门控通道(Cyclic Nucleotide Gated Channels,CNGCs)家族基因,其中GsCNGC20-d的上调倍数最高;与Ca2+信号直接相关的钙依赖的蛋白激酶(Calcuim Dependent Protein Kinases,CDPKs)家族成员在上述通路中也显著富集,其中注释为GsCDPK29的基因上调倍数最高。由此推测GsCNGC20-dGsCDPK29可能为野生大豆BB52材料耐盐的关键候选基因。

野生大豆中共有38个CNGC成员,它们均具有保守的CNBD结构域(L/I-X2-G/A-X1-F/S/V/A-X1-G-D/E-ELL-X1-W/R-X12,13,22-S-X2-T-X7-E-A/S-F/L-X1-L)。38个GsCNGC成员被分为5个亚族,其中GsCNGC20-d聚类在第Ⅳ-A亚族,与拟南芥AtCNGC20高度同源。GsCNGC家族的进化选择压力分析结果显示所有的GsCNGC基因在进化过程中均为负选择,差异候选基因GsCNGC20-d为三倍复制基因。RT-PCR鉴定和GsCNGC20-dpro::GUS转基因拟南芥的GUS染色结果反映了GsCNGC20-d基因及其启动子对盐胁迫的应答特性。GsCNGC20-d蛋白定位于细胞质膜。盐胁迫下,GsCNGC20-d能介导大豆发根组合植株或转基因拟南芥植株根尖细胞Ca2+的内流,从而提高[Ca2+]cyt水平,影响盐胁迫下GsCNGC20-d过表达大豆发根组合植株或拟南芥植株根系对Na+、K+吸收及其向地上部转运,使植株地上部的Na+/K+值显著降低,进而导致植株耐盐性的增强。同时,GsCNGC20-d在大豆发根组合植株中过表达会导致SOS3SOS1NHX1的表达量上调,并在NaCl处理后表达量显著高于转空载(Empty Vector, EV)的植株,表明了GsCNGC20-d能提高耐盐相关基因的表达来减轻NaCl对植株的伤害作用。

GsCDPK29与已报道的参与耐盐性调控的CDPK家族基因高度同源,RT-PCR鉴定与GUS染色结果也反映了GsCDPK29及其启动子对盐胁迫的响应。GsCDPK29蛋白定位于细胞质膜,并与GsCNGC20-d在细胞质膜上存在互作效应。GsCNGC20-dGsCDPK29基因过表达时均可增强OEGsCNGC20-d、OEGsCDPK29大豆发根组合植株和WT-GsCNGC20-d、WT-GsCDPK29转基因拟南芥植株的耐盐性,而二者共表达的大豆发根组合植株(Co-OE)和转基因拟南芥植株(WT-Co-OE)则表现协同增强的盐害缓解效应。而拟南芥atcngc20atcdpk29双突变体植株则表现出与WT、突变体atcngc20atcdpk29突变体相比对盐胁迫更敏感的表型,说明在拟南芥中两基因之间也存在协同作用,这也从侧面印证了野生大豆GsCNGC20-d和GsCDPK29蛋白之间的协同关系。

综上所述,野生大豆BB52与栽培大豆N23674的耐盐差异基因编码的GsCNGC20-d能够通过介导盐胁迫下植株根尖[Ca2+]cyt水平的变化,并与GsCDPK29协同作用,影响过表达大豆发根组合植株或转基因拟南芥幼苗对Na+、K+离子的吸收及其向地上部的转运,维持地上部较低的Na+/K+值,从而增强植株的耐盐性。

外文摘要:

Salt stress is one of the abiotic stress factors that seriously harm the production of crops, and the ion toxicity caused by salt stress will have adverse effects on various life activities of plants. Plants maintain their normal life activities through the selective absorption of ions, accumulation of osmotic regulatory substances, scavenging of reactive oxygen species, and hormone response mechanisms. The increased ability on salt stress tolerance of plants is not only reflected in the reduction of Na+ content but also in the maintenance of the optimal cytosolic Na+/K+ ratio is the key determinant factor of plant tolerance to salt stress. Therefore, it is important to search for typical ion channels and transporters of plant Na+ and K+ homeostasis, and specific signaling pathways to understand salt stress response mechanisms. Meanwhile, plants also can activate a series of signal pathways resistance to salt stress. In order to activate these response pathways, plants first sense salt stress signals through sensors on the cell surface, and then transmit the signals to second messengers (such as Ca2+), finally the second messengers carried the signals into the cell, causing a series of response mechanisms. Soybean is an important source of vegetable protein and oil in human production and life. The cultivated soybean (Glycine max) was domesticated from its wild species (Glycine soja). Compared with cultivated soybean, wild soybean has more abundant genetic diversity, salt tolerance, drought tolerance, shade tolerance, disease and insect resistance and stronger field survival ability. Thus, wild soybean has important research value in the soybean salt tolerance mechanism and variety improvement.

In this study, comparative transcriptomic and bioinformatics analysis methods were used and screened key functional genes were based on the difference in salt tolerance between wild soybean BB52 and cultivated soybean N23674 materials. The qRT-PCR, subcellular localization, Y2H, LUC, BiFC, CRISPR-Cas9, Arabidopsis hybridization, Arabidopsis floral dip and soybean hairy-root transformation technologies were used to investigate the physiological function mechanisms of key genes for salt tolerance in wild soybean involved in salt stress regulation. The main research results are as follows:

Wild soybean BB52 materials showed stronger adaptability to salt stress than cultivated soybean N23674. Wild soybean BB52 could mainly accumulate excessive Na+ in the roots, reduce the transport to the shoots, reduce the transport to the aboveground part, and reduce the content of Na+ and the Na+/K+ ratio in the shoots, thus alleviating the damage of NaCl on the shoots of soybean plants. 8651 differentially expressed genes were analyzed specifically up-regulated in the roots of salt-tolerant wild soybean BB52 according to the transcriptome sequencing results of the roots of BB52 and N23674 seedlings under salt stress. The Ca2+ signal-related regulatory pathways in plant-pathogen interaction pathways were screened by GO annotation and KEGG enrichment, and six Cyclic Nucleotide Gated Channels (CNGCs) encoding Ca2+ transport-related channel proteins were significantly enriched in the upstream of the pathway, among which GsCNGC20-d had the highest expression level. Calcium Dependent Protein Kinases (CDPK) family members directly related to Ca2+ signaling are also significantly enriched in the above plant-pathogen interaction pathways. Among them, the differentially expressed gene annotated as GsCDPK29 has the highest expression level. It is speculated that GsCNGC20-d and GsCDPK29 may be the key candidate genes for salt tolerance of wild soybean BB52.

A total of 38 CNGC members were identified, and all of them were found to have a conserved CNBD domain (L/I-X2-G/A-X1-F/S/V/A-X1-G-D/E-ELL-X1-W/R-X12,13,22-S-X2-T-X7-E-A/S-F/L-X1-L). 38 CNGC were divided into 5 subfamilies, GsCNGC20-d was clustered in subfamily Ⅳ-A, which was highly homologous to AtCNGC20. The results of the evolutionary selection pressure analysis of GsCNGC family showed that all GsCNGC genes were negatively selected during the evolutionary process. And GsCNGC20-d belongs to a triple duplication gene. The results of qRT-PCR identification and GUS staining analysis of GsCNGC20-dpro::GUS transgenic Arabidopsis showed that GsCNGC20-d and its promoter response to salt stress. GsCNGC20-d protein was located on the plasma membrane. GsCNGC20-d could promote Ca2+ influx and increased [Ca2+]cyt levels under salt stress, influence the Na+ and K+ uptake and its transport in the roots of GsCNGC20-d overexpressing soybean hairy-root composite plants or transgenic Arabidopsis plants under salt stress, significantly reduced the Na+/K+ ratio in the shoots of the plants, thus resulting in increased the salt tolerance of the plants. Meanwhile, OEGsCNGC20-d soybean hairy-root composite plants resulted in the upregulation of SOS3, SOS1, and NHX1, showing a significantly higher expression than EV plants under NaCl treatment. These results indicated that GsCNGC20-d could further relieve the damage of NaCl on plants by improving the expression of salt-tolerant-related genes.

GsCDPK29 was highly homologous to the reported CDPK family genes related to salt tolerance, and the results of qRT-PCR and GUS staining also reflected GsCDPK29 and its promoter response to salt stress. GsCDPK29 was located on plasma membrane, and interacted with GsCNGC20-d on the plasma membrane. Overexpressed GsCNGC20-d or GsCDPK29 genes could enhance the salt tolerance of soybean hairy-root composite plants (OEGsCNGC20-d and OEGsCDPK29) and Arabidopsis plants (WT-GsCNGC20-d and WT-GsCDPK29). However, their co-overexpressed soybean hairy-root composite plants (Co-OE) and transgenic Arabidopsis plants (WT-Co-OE) showed synergistic enhanced salt mitigation effects. Arabidopsis atcngc20atcdpk29 double mutant plants showed a more salt-sensitive phenotype than WT, atcngc20 and atcdpk29 mutants. These results indicated that there was a synergistic effect between these two genes in Arabidopsis, and it was also confirmed from the side that the synergistic relationship existed between wild soybean GsCNGC20-d and GsCDPK29 protein.

In conclusion, the GsCNGC20-d protein encoded by salt tolerance differentially expressed gene between BB52 and N23674 can mediate the changes of root tip cells [Ca2+]cyt level and synergistic with GsCDPK29, influenced the process of Na+, K+ absorption and transport to the shoots of transgenic soybean hairy-root composite plants and Arabidopsis seedlings, maintained the lower Na+/K+ values in shoots of plants, thus enhanced the salt tolerance of plants.

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